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Raouf Ghavami

Raouf Ghavami

Academic rank: Professor
ORCID:
Education: PhD.
ScopusId: 55408187000
Faculty: Faculty of Science
Address:
Phone: 08713393265

Research

Title
The identification of new ATAD2 bromodomain inhibitors: the application of combined ligand and structure-based virtual screening
Type
JournalPaper
Keywords
ATAD2 bromodomain inhibitor; virtual screening; LBVS; SBVS; molecular docking
Year
2017
Journal SAR AND QSAR IN ENVIRONMENTAL RESEARCH
DOI
Researchers sepehri bakhtyar ، Raouf Ghavami

Abstract

Ligand-based virtual screening (LBVS) and structure-based virtual screening (SBVS) approaches were used to identify new inhibitors for ATAD2 bromodomain. The LBVS approach was used to search 23,129,083 clean compounds to identify compounds similar to an active compound with reported pIC50 equal to 7.2. Based on LBVS results, 19 compounds were selected. To perform SBVS, by applying nine filters on 23,129,083 clean compounds, 1,057,060 compounds were selected. After performing SBVS on these selected compounds with idock software, 16 compounds with the lowest binding energies were selected. More accurate molecular docking analysis was performed on these 35 selected compounds by using iGEMDOCK software and six of them with the lowest binding energies were selected as hit compounds. These compounds were zinc36647229, zinc77969074, zinc13637358, zinc77971540, zinc12991296 and zinc19374204.