2024 : 5 : 3
Raouf Ghavami

Raouf Ghavami

Academic rank: Professor
ORCID:
Education: PhD.
ScopusId: 55408187000
Faculty: Faculty of Science
Address:
Phone: 08713393265

Research

Title
High predictive QSAR models for predicting the SARS coronavirus main protease inhibition activity of ketone-based covalent inhibitors
Type
JournalPaper
Keywords
QSAR · SARS-CoV-1 · SARS-CoV-2 · 3CLpro inhibition activity · COVID-19
Year
2022
Journal Journal of the Iranian Chemical Society
DOI
Researchers sepehri bakhtyar ، Mohammad Kohnehpoushi ، Raouf Ghavami

Abstract

In this research, a dataset including 29 ketone-based covalent inhibitors with SARS-CoV-1 3CLpro inhibition activity was used to develop high predictive QSAR models. Twenty-two molecules were put in train set and seven molecules in test set. By using stepwise MLR method for molecules in train set, four molecular descriptors including Mor26p, Hy, GATS7p and Mor04v were selected to build QSAR models. MLR and ANN methods were used to create QSAR models for predicting the activity of molecules in both train and test sets. Both QSAR models were validated by calculating several statistical parameters. R2 values for the test set of MLR and ANN models were 0.93 and 0.95, respectively, and RMSE values for their test sets were 0.24 and 0.17, respectively. Other calculated statistical parameters (especially Q2 F3 parameter) show that created ANN model has more predictive power with respect to developed MLR model (with four descriptor). Calculated leverages for all molecules show that predicted pIC50 (by both QSAR models) for all molecules is acceptable, and drawn residuals plots show that there is no systematic error in building both QSAR modes. Also, based on developed MLR model, used molecular descriptors were interpreted.